Article

nQuire: A Statistical Framework For Ploidy Estimation Using Next Generation Sequencing

2017-05-29

Abstract excerpt

Intraspecific variation in ploidy occurs in a wide range of species including pathogenic and nonpathogenic eukaryotes such as yeasts and oomycetes. Ploidy can be inferred indirectly - without measuring DNA content - from experiments using next-generation sequencing (NGS). We present nQuire, a statistical framework that distinguishes between diploids, triploids and tetraploids using NGS. The command-line tool model...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 440f6a48-7f2a-5fe7-b36d-86e731e2ee65
DOI: 10.1101/143537

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

nQuire: A Statistical Framework For Ploidy Estimation Using Next Generation SequencingDOI 10.1101/143537Read

HMMploidy: inference of ploidy levels from short-read sequencing dataSemantic proximity Read

ploidyfrost: Reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graphs.Semantic proximity Read

Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state.Semantic proximity Read

A Bioinformatic Pipeline to Estimate Ploidy Level from Target Capture Sequence Data Obtained from Herbarium Specimens.Semantic proximity Read

HapTree: a novel Bayesian framework for single individual polyplotyping using NGS data.Semantic proximity Read

Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation.Semantic proximity Read

SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data.Semantic proximity Read

The Population Genetics of Ploidy Change in FungiSemantic proximity Read

Polyploidy is widespread in MicrosporidiaSemantic proximity Read

Analyzing Autopolyploid Genetic Data Using GenoDive.Semantic proximity Read

Fast and accurate estimation of multidimensional site frequency spectra from low-coverage high-throughput sequencing data.Semantic proximity Read

PolyCluster: Minimum Fragment Disagreement Clustering for Polyploid Phasing.Semantic proximity Read