Article

Variational Inference Using Approximate Likelihood Under the Coalescent With Recombination

2020-08-20

Abstract excerpt

Coalescent methods are proven and powerful tools for population genetics, phylogenetics, epidemiology, and other fields. A promising avenue for the analysis of large genomic alignments, which are increasingly common, are coalescent hidden Markov model (coalHMM) methods, but these methods have lacked general usability and flexibility. We introduce a novel method for automatically learning a coalHMM and inferring th...

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Literature Corpus work: 3580783e-350c-5f3f-a21c-d37646fb4ab8
DOI: 10.1101/2020.08.19.258137

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