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Article

Real-time Plasmid Transmission Detection Pipeline

2024-07-14

Abstract excerpt

The spread of antimicrobial resistance among bacteria by horizontal plasmid transmissions poses a major challenge for clinical microbiology. Here, we evaluate a new real-time plasmid transmission detection pipeline implemented in the SeqSphere + (Ridom GmbH, Münster, Germany) software. Within the pipeline, a local Mash plasmid database is created and Mash searches with a distance threshold of 0.001 are used to t...

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Identifiers and source

Literature Corpus work
2df40878-5a40-54d1-9a66-42fd812ecac8
DOI
10.1101/2024.07.09.602722
Open publication

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Real-time Plasmid Transmission Detection PipelineDOI 10.1101/2024.07.09.602722
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