Article

scMontage: Fast and Robust Gene Expression Similarity Search for Massive Single-cell Data

2020-08-31

Abstract excerpt

Single-cell RNA-seq (scRNA-seq) analysis is widely used to characterize cell types or detect heterogeneity of cell states at much higher resolutions than ever before. Here we introduce scMontage ( https://scmontage.stemcellinformatics.org ), a gene expression similarity search server dedicated to scRNA-seq data, which can rapidly compare a query with thousands of samples within a few seconds. The scMontage search...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2747f7b0-7e84-5d7a-ba84-fb59ec63c328
DOI: 10.1101/2020.08.30.271395

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

scMontage: Fast and Robust Gene Expression Similarity Search for Massive Single-cell DataDOI 10.1101/2020.08.30.271395Read

CancerSCEM: a database of single-cell expression map across various human cancersSemantic proximity Read

scRNASeqDB: a database for gene expression profiling in human single cell by RNA-seqSemantic proximity Read

scCompass: An integrated cross-species scRNA-seq database for AI-readySemantic proximity Read

Genular: An Integrated Platform for Defining Cellular Identity and Function through Single-Cell Gene Expression and Multi-Domain Biological DataSemantic proximity Read

scQuery: a web server for comparative analysis of single-cell RNA-seq dataSemantic proximity Read

Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophagesSemantic proximity Read

FIRM: Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasetsSemantic proximity Read

Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq data setsSemantic proximity Read

Highly accurate estimation of cell type abundance in bulk tissues based on single-cell reference and domain adaptive matchingSemantic proximity Read

scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysisSemantic proximity Read

<i>easybio</i> : an R Package for Single-Cell Annotation with CellMarker2.0Semantic proximity Read

Integrative analysis of single-cell gene expression: A comprehensive database approachSemantic proximity Read