Article

scCompass: An integrated cross-species scRNA-seq database for AI-ready

2024-11-15

Abstract excerpt

Emerging single-cell sequencing technology has generated large amounts of data, allowing analysis of cellular dynamics and gene regulation at the single-cell resolution. Advances in artificial intelligence enhance life sciences research by delivering critical insights and optimizing data analysis processes. However, inconsistent data processing quality and standards remain to be a major challenge. Here we propose...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 2360f925-b9a6-5c66-9427-7eaaecef91f2
DOI: 10.1101/2024.11.12.623138

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

scCompass: An integrated cross-species scRNA-seq database for AI-readyDOI 10.1101/2024.11.12.623138Read

GeneCompass: Deciphering Universal Gene Regulatory Mechanisms with Knowledge-Informed Cross-Species Foundation ModelSemantic proximity Read

Cross-species imputation and comparison of single-cell transcriptomic profilesSemantic proximity Read

Cross-species cell-type assignment of single-cell RNA-seq by a heterogeneous graph neural networkSemantic proximity Read

scMontage: Fast and Robust Gene Expression Similarity Search for Massive Single-cell DataSemantic proximity Read

FIRM: Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasetsSemantic proximity Read

singleCellBase: a high-quality manually curated database of cell markers for single cell annotation across multiple speciesSemantic proximity Read

Organism-scale annotation with Pan-human AzimuthSemantic proximity Read

Mining alternative splicing patterns in scRNA-seq data using scASfindSemantic proximity Read

CDCP: a visualization and analyzing platform for single-cell datasetsSemantic proximity Read

scRICA: An R package for multiple-sample single-cell RNA-seq data integrative comparative analysisSemantic proximity Read

AENetMoX: Fast and Precise scRNA-seq Gene Regulatory Network Inference Through Multi-Modal Feature Integration in Brain OrganoidsSemantic proximity Read

Sfaira accelerates data and model reuse in single cell genomicsSemantic proximity Read