Article

Bactopia: a flexible pipeline for complete analysis of bacterial genomes

2020-03-02

Abstract excerpt

Sequencing of bacterial genomes using Illumina technology has become such a standard procedure that often data are generated faster than can be conveniently analyzed. We created a new series of pipelines called Bactopia, built using Nextflow workflow software, to provide efficient comparative genomic analyses for bacterial species or genera. Bactopia consists of a dataset setup step (Bactopia Datasets; BaDs) where...

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Literature Corpus work: 25485248-9d67-5d0e-86fc-e8a22a916680
DOI: 10.1101/2020.02.28.969394

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