Article

High-confidence Coding and Noncoding Transcriptome Maps

2017-02-17

Abstract excerpt

The advent of high-throughput RNA-sequencing (RNA-seq) has led to the discovery of unprecedentedly immense transcriptomes encoded by eukaryotic genomes. However, the transcriptome maps are still incomplete partly because they were mostly reconstructed based on RNA-seq reads that lack their orientations (known as unstranded reads) and certain boundary information. Methods to expand the usability of unstranded RNA-s...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 23721202-5dd8-5fe6-887d-4a246161317e
DOI: 10.1101/109363

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

High-confidence Coding and Noncoding Transcriptome MapsDOI 10.1101/109363Read

An atlas of human long non-coding RNAs with accurate 5' ends.Semantic proximity Read

Intergenic RNA mainly derives from nascent transcripts of known genesSemantic proximity Read

High-throughput annotation of full-length long noncoding RNAs with Capture Long-Read SequencingSemantic proximity Read

Genome-wide identification of transcript start and end sites by transcript isoform sequencing.Semantic proximity Read

lncRNAKB: A comprehensive knowledgebase of long non-coding RNAsSemantic proximity Read

Assessment of mapping strategies for determining the 5□-end of mRNAs and long-noncoding RNAs with short read sequencesSemantic proximity Read

Facilitating genome annotation using ANNEXA and long-read RNA sequencingSemantic proximity Read

Characterizing and annotating the genome using RNA-seq data.Semantic proximity Read

LoRTIA Plus: a chemistry-agnostic, feature-first software package for long-read transcriptome annotationSemantic proximity Read

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq.Semantic proximity Read

Automated Navigation of the lncRNA Transcriptome: A comprehensive SnakeMake based computational Pipeline for robust Identification of lncRNAs and their putative targetsSemantic proximity Read

What are the most influencing factors in reconstructing a reliable transcriptome assembly?Semantic proximity Read