Article

Exogenous sequences in tumors and immune cells (exotic): a tool for estimating the microbe abundances in tumor RNAseq data

2022-08-17

Abstract excerpt

The microbiome affects cancer, from carcinogenesis to response to treatments. New evidence suggests that microbes are also present in many tumors, though the scope of how they affect tumor biology and clinical outcomes is unclear. A broad survey of tumor microbiome samples across several independent datasets is needed to identify robust correlations for follow-up testing. We created a tool to carefully identify th...

Topics

Open a Topic to create a Post that cites this publication.

Identifiers and source

Literature Corpus work: 19841981-33c8-57b6-bc3d-2e52ceee92a6
DOI: 10.1101/2022.08.16.503205

Open publication

Related research

Semantic proximity does not establish scientific evidence.

Click a neighbor to travelStep 1 · 12 closest

Exogenous sequences in tumors and immune cells (exotic): a tool for estimating the microbe abundances in tumor RNAseq dataDOI 10.1101/2022.08.16.503205Read

Exogenous Sequences in Tumors and Immune Cells (Exotic): A Tool for Estimating the Microbe Abundances in Tumor RNA-seq DataSemantic proximity Read

A bioinformatics tool for identifying intratumoral microbes from the ORIEN datasetSemantic proximity Read

Immune-oncology-microbiome axis may result in AKP or anti-AKP effects in intratumor microbiomesSemantic proximity Read

Utilizing tumor microenvironment microbial profiles and host gene expressions for survival subtyping in diverse types of cancersSemantic proximity Read

A pan-cancer analysis of the microbiome in metastatic cancerSemantic proximity Read

Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-MicrobesSemantic proximity Read

Characterization of the human tumor microbiome reveals tumor-type specific intra-cellular bacteriaSemantic proximity Read

Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scaleSemantic proximity Read

Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancersSemantic proximity Read

Tumor and pan-tumor diversity and heterogeneity of cancer tissue microbiomes: a medical ecology analysis across 32 cancer typesSemantic proximity Read

Tumor-microbiome links subtype, cellular programs, and immunity in pancreatic cancerSemantic proximity Read

Revisiting the cancer microbiome using PRISMSemantic proximity Read