Article

How tool combinations in different pipeline versions affect the outcome in RNA-seq analysis

2023-10-06

Abstract excerpt

<h4>ABSTRACT</h4> Data analysis tools are continuously changed and improved over time. In order to test how these changes influence the comparability between analyses, the output of different workflow options of the nf-core/rnaseq pipeline were compared. Five different pipeline settings (STAR+Salmon, STAR+RSEM, STAR+featureCounts, HiSAT+featureCounts, pseudoaligner Salmon) were run on three datasets (human, Arabi...

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Literature Corpus work: 0f29842b-6ccb-5fbd-84e3-d779ee9167fc
DOI: 10.1101/2023.10.04.560168

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