Article

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

2016-07-05

Abstract excerpt

RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. The pipeline...

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Literature Corpus work: 0e005a11-598b-566b-aa13-a0643c796f66
DOI: 10.12688/f1000research.9110.1

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