Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

De Novo Genome Assemblies of Four Rainbow Trout Genetic Lines Reveal Structural Variants in Pursuit of a Pangenome Reference.

Molecular ecology resources - 1 Jul 2026

Ali Ali, Waldbieser Geoffrey C, Youngblood Ramey C, Wheeler Paul A, Scheffler Brian E, Willis Stuart, Narum Shawn R, Thorgaard Gary H, Salem Mohamed, Palti Yniv

Abstract excerpt

Rainbow trout (Oncorhynchus mykiss) exhibit extensive genomic diversity shaped by domestication, life history and geographic origin. To advance the development of a comprehensive pangenome reference, we present new de novo genome assemblies of two genetically and ecologically distinct lines: Whale Rock (WR; wild, landlocked, Central California) and Keithley Creek (KC; wild, resident, interior Columbia Basin),...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genetic Variation
Share to Genome

Methodology Data sources Editorial policy Privacy Delete account & data About Contact Helena Bioinformatics

Share to Genomic Structural Variation

Share to Oncorhynchus mykiss

Share to Sequence Analysis, DNA

Source

Open in PubMed Open full text

Identifiers

PMID: 42305012
DOI: 10.1111/1755-0998.70167
PMCID: PMC13273448

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 15 Oct 2026.

Related research

Semantic proximity does not establish scientific evidence. Graph snapshot: 2026-09-29.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

De Novo Genome Assemblies of Four Rainbow Trout Genetic Lines Reveal Structural Variants in Pursuit of a Pangenome Reference.PMID 42305012Read ↗

Characterization and distribution of a 14-Mb chromosomal inversion in native populations of rainbow trout (Oncorhynchus mykiss).Semantic proximity Read ↗

A pangenome framework uncovers the role of deletions in repeated evolution of cave-derived traits.Semantic proximity Read ↗

Pan-genomics and multi-omics for deciphering genetic variation and accelerating genetic improvement in ruminant livestock.Semantic proximity Read ↗

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetesSemantic proximity Read ↗

Haplotype-resolved reference genomes of the sea turtle clade unveil ultra-syntenic genomes with hotspots of divergence.Semantic proximity Read ↗

The structural variation landscape in 492 Atlantic salmon genomes.Semantic proximity Read ↗

Dog10K_Boxer_Tasha_1.0: A long-read assembly of the dog reference genomeSemantic proximity Read ↗

Insights from a chum salmon (Oncorhynchus keta) genome assembly regarding whole-genome duplication and nucleotide variation influencing gene function.Semantic proximity Read ↗

The structural variation landscape in 492 Atlantic salmon genomesSemantic proximity Read ↗

A first generation integrated map of the rainbow trout genome.Semantic proximity Read ↗

A ddRAD-based genetic map and its integration with the genome assembly of Japanese eel (Anguilla japonica) provides insights into genome evolution after the teleost-specific genome duplication.Semantic proximity Read ↗

A beary good genome: Haplotype-resolved, chromosome-level assembly of the brown bear ( <i>Ursus arctos</i> )Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.