Article
The structural variation landscape in 492 Atlantic salmon genomes.
Nature communications - 14 Oct 2020
Bertolotti Alicia C, Layer Ryan M, Gundappa Manu Kumar, Gallagher Michael D, Pehlivanoglu Ege, Nome Torfinn, Robledo Diego, Kent Matthew P, Røsæg Line L, Holen Matilde M, Mulugeta Teshome D, Ashton Thomas J, Hindar Kjetil, Sægrov Harald, Florø-Larsen Bjørn, Erkinaro Jaakko, Primmer Craig R, Bernatchez Louis, Martin Samuel A M, Johnston Ian A, Sandve Simen R, Lien Sigbjørn, Macqueen Daniel J
Abstract excerpt
Structural variants (SVs) are a major source of genetic and phenotypic variation, but remain challenging to accurately type and are hence poorly characterized in most species. We present an approach for reliable SV discovery in non-model species using whole genome sequencing and report 15,483 high-confidence SVs in 492 Atlantic salmon (Salmo salar L.) sampled from a broad phylogeographic distribution. These SVs...
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