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Benchmarking genomic variant calling tools in inbred mouse strains: recommendations and considerations.

Genetics - 6 Jul 2026

Garretson Alexis, Blanco-Berdugo Laura, Roberts Aleisha M G, Dumont Beth L

Abstract excerpt

With the growing affordability of whole-genome sequencing, variant identification has become an increasingly common task in modern genomics. In recent years, the number of software packages available for variant calling has rapidly increased. Understanding the benefits and drawbacks of different tools is important in setting leading practices. These considerations are especially crucial in model organism...

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PMID: 42234818
DOI: 10.1093/genetics/iyag131
PMCID: PMC13334110

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