lcUMAPtSNE: use of non-linear dimensionality reduction techniques with genotype likelihoods.

Abstract excerpt

BACKGROUND: Understanding population structure is essential for conservation genetics, as it provides insights into population connectivity and supports the development of targeted strategies to preserve genetic diversity and adaptability. T-distributed stochastic neighbor embedding (t-SNE) and uniform manifold approximation and projection (UMAP) have proven effective for revealing population genetic structures...

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