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Article

Detection of short tandem repeats in the cattle genome: a comparison of bioinformatic tools.

BMC genomics - 26 Mar 2026

Tran Quan Hong, Nguyen Tuan Viet, Wang Jianghui, MacLeod Iona M, Chamberlain Amanda J

Abstract excerpt

BACKGROUND: Short tandem repeats (STRs) are repetitive DNA sequences with 1–6 nucleotide repeat units, exhibiting high polymorphism due to varying repeat counts. STRs are more variable than SNPs and can cause genetic disorders. With population-scale cattle whole-genome sequencing data available, whole-genome STR identification has attracted new interest, but challenges remain due to the lack of standardized...

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Topics

Animals
Cattle
Microsatellite Repeats
Genome
Genomics
Heterozygote
Genotype

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PMID: 41882523
DOI: 10.1186/s12864-026-12753-4
PMCID: PMC13188816

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