Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Systematic Profiling of Short Tandem Repeats in the Cattle Genome.

Genome biology and evolution - 1 Jan 2017

Xu Lingyang, Haasl Ryan J, Sun Jiajie, Zhou Yang, Bickhart Derek M, Li Junya, Song Jiuzhou, Sonstegard Tad S, Van Tassell Curtis P, Lewin Harris A, Liu George E

Abstract excerpt

Short tandem repeats (STRs), or microsatellites, are genetic variants with repetitive 2–6 base pair motifs in many mammalian genomes. Using high-throughput sequencing and experimental validations, we systematically profiled STRs in five Holsteins. We identified a total of 60,106 microsatellites and generated the first high-resolution STR map, representing a substantial pool of polymorphism in dairy cattle. We...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Cattle
Share to Genome

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Microsatellite Repeats

Share to Polymorphism, Single Nucleotide

Source

Open in PubMed Open full text

Identifiers

PMID: 28172841
DOI: 10.1093/gbe/evw256
PMCID: PMC5381564

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Systematic Profiling of Short Tandem Repeats in the Cattle Genome.PMID 28172841Read ↗

The genomic landscape of short tandem repeats in cattle.Semantic proximity Read ↗

Detection and evaluation of parameters influencing the identification of heterozygous-enriched regions in Holstein cattle based on SNP chip or whole-genome sequence data.Semantic proximity Read ↗

Genomic characterization of autozygosity and recent inbreeding trends in all major breeds of US dairy cattle.Semantic proximity Read ↗

Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species.Semantic proximity Read ↗

Short Tandem Repeats in the era of next-generation sequencing: from historical loci to population databases.Semantic proximity Read ↗

The landscape of human STR variation.Semantic proximity Read ↗

Structural variants and short tandem repeats impact gene expression and splicing in bovine testis tissue.Semantic proximity Read ↗

Sequencing and characterizing short tandem repeats in the human genome.Semantic proximity Read ↗

High density LD-based structural variations analysis in cattle genome.Semantic proximity Read ↗

Profiling short tandem repeats from short reads.Semantic proximity Read ↗

The Landscape of Human STR VariationSemantic proximity Read ↗

Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.