Learning-based parallel acceleration for HaplotypeCaller.

Abstract excerpt

In the genome analysis workflow, Genome Analysis Toolkit (GATK) HaplotypeCaller is a widely used variant calling tool designed to accurately identify single nucleotide polymorphisms (SNPs) and insertions/deletions (Indels) in samples. However, when processing large-scale datasets, HaplotypeCaller often faces the challenge of excessively long runtime. Parallelizing GATK HaplotypeCaller with data segmentation is an...

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