A matrix-analytical sampling formula for time-homogeneous coalescent processes under the infinite sites mutation model.

Abstract excerpt

In this paper we develop a general framework for calculating the probability of a genetic sample under a time-homogeneous coalescent process and the infinite sites mutation model. The evolutionary model that we consider can be characterized as a two-step procedure: A coalescent process that describes the ancestral relatedness of the samples and a sprinkling of mutations in separate sites on the ancestral tree...

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