Article
Adjusting for principal components can induce collider bias in genome-wide association studies.
PLoS genetics - 1 Dec 2024
Grinde Kelsey E, Browning Brian L, Reiner Alexander P, Thornton Timothy A, Browning Sharon R
Abstract excerpt
Principal component analysis (PCA) is widely used to control for population structure in genome-wide association studies (GWAS). Top principal components (PCs) typically reflect population structure, but challenges arise in deciding how many PCs are needed and ensuring that PCs do not capture other artifacts such as regions with atypical linkage disequilibrium (LD). In response to the latter, many groups suggest...
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