Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Structural variation reshapes population gene expression and trait variation in 2,105 Brassica napus accessions.

Nature genetics - 1 Nov 2024

Zhang Yuanyuan, Yang Zhiquan, He Yizhou, Liu Dongxu, Liu Yueying, Liang Congyuan, Xie Meili, Jia Yupeng, Ke Qinglin, Zhou Yongming, Cheng Xiaohui, Huang Junyan, Liu Lijiang, Xiang Yang, Raman Harsh, Kliebenstein Daniel J, Liu Shengyi, Yang Qing-Yong

Abstract excerpt

Although individual genomic structural variants (SVs) are known to influence gene expression and trait variation, the extent and scale of SV impact across a species remain unknown. In the present study, we constructed a reference library of 334,461 SVs from genome assemblies of 16 representative morphotypes of neopolyploid Brassica napus accessions and detected 258,865 SVs in 2,105 resequenced genomes. Coupling...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Brassica napus
Share to Gene Expression Regulation, Plant

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genetic Variation

Share to Genome, Plant

Share to Genome-Wide Association Study

Share to Genomic Structural Variation

Share to Quantitative Trait Loci

Share to Transcriptome

Source

Open in PubMed Open full text

Identifiers

PMID: 39501128
DOI: 10.1038/s41588-024-01957-7
PMCID: PMC11549052

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Structural variation reshapes population gene expression and trait variation in 2,105 Brassica napus accessions.PMID 39501128Read ↗

Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus.Semantic proximity Read ↗

Associative transcriptomics study dissects the genetic architecture of seed glucosinolate content in Brassica napus.Semantic proximity Read ↗

Population-scale landscape of TE insertion polymorphisms reveal their roles in gene expression regulation, adaptation, and agronomic traits in Brassica napus.Semantic proximity Read ↗

Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations.Semantic proximity Read ↗

Long-read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plantSemantic proximity Read ↗

Grapevine pangenome facilitates trait genetics and genomic breeding.Semantic proximity Read ↗

Genetic regulatory landscape of gene expression during leaf and stem development in common tobacco.Semantic proximity Read ↗

Validation of an updated Associative Transcriptomics platform for the polyploid crop species Brassica napus by dissection of the genetic architecture of erucic acid and tocopherol isoform variation in seeds.Semantic proximity Read ↗

Long-read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant.Semantic proximity Read ↗

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.Semantic proximity Read ↗

Cataloging Plant Genome Structural Variations.Semantic proximity Read ↗

Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.