Article
Grapevine pangenome facilitates trait genetics and genomic breeding.
Nature genetics - 1 Dec 2024
Liu Zhongjie, Wang Nan, Su Ying, Long Qiming, Peng Yanling, Shangguan Lingfei, Zhang Fan, Cao Shuo, Wang Xu, Ge Mengqing, Xue Hui, Ma Zhiyao, Liu Wenwen, Xu Xiaodong, Li Chaochao, Cao Xuejing, Ahmad Bilal, Su Xiangnian, Liu Yuting, Huang Guizhou, Du Mengrui, Liu Zhenya, Gan Yu, Sun Lei, Fan Xiucai, Zhang Chuan, Zhong Haixia, Leng Xiangpeng, Ren Yanhua, Dong Tianyu, Pei Dan, Wu Xinyu, Jin Zhongxin, Wang Yiwen, Liu Chonghuai, Chen Jinfeng, Gaut Brandon, Huang Sanwen, Fang Jinggui, Xiao Hua, Zhou Yongfeng
Abstract excerpt
Grapevine breeding is hindered by a limited understanding of the genetic basis of complex agronomic traits. This study constructs a graph-based pangenome reference (Grapepan v.1.0) from 18 newly generated phased telomere-to-telomere assemblies and 11 published assemblies. Using Grapepan v.1.0, we build a variation map with 9,105,787 short variations and 236,449 structural variations (SVs) from the resequencing...
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