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Article

Impact of reference design on estimating SARS-CoV-2 lineage abundances from wastewater sequencing data.

GigaScience - 2 Jan 2024

Aßmann Eva, Agrawal Shelesh, Orschler Laura, Böttcher Sindy, Lackner Susanne, Hölzer Martin

Abstract excerpt

BACKGROUND: Sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA from wastewater samples has emerged as a valuable tool for detecting the presence and relative abundances of SARS-CoV-2 variants in a community. By analyzing the viral genetic material present in wastewater, researchers and public health authorities can gain early insights into the spread of virus lineages and emerging...

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Identifiers

PMID: 39115959
DOI: 10.1093/gigascience/giae051
PMCID: PMC11308188

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-08.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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