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estimateR: an R package to estimate and monitor the effective reproductive number

11 Aug 2023

Abstract excerpt

BACKGROUND: Accurate estimation of the effective reproductive number ([Formula: see text]) of epidemic outbreaks is of central relevance to public health policy and decision making. We present estimateR, an R package for the estimation of the reproductive number through time from delayed observations of infection events. Such delayed observations include confirmed cases, hospitalizations or deaths. The package...

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PMID: 37568078
DOI: 10.1186/s12859-023-05428-4

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