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MGtree: A Fast and Flexible Alignment-Based Metagenomics Pipeline.

Viruses - 3 Jun 2026

Sholes Samantha L, Norton Scott, Gonzalez Alfredo, Gaspar John M

Abstract excerpt

Metagenomics analysis is a critical tool in identifying and typing viral samples to aid surveillance, clinical, epidemiological, and other workflows. Despite advances in sequencing technology and analysis pipelines, there are still limitations that lead to reduced taxonomic resolution or false positives from highly recombinant or challenging samples. Here we describe MGtree, a novel metagenomics pipeline that...

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Identifiers

PMID: 42357653
DOI: 10.3390/v18060643
PMCID: PMC13307765

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 6 Sept 2026.

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