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Article

Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.

Nucleic acids research - 11 Aug 2023

Shiraishi Yuichi, Koya Junji, Chiba Kenichi, Okada Ai, Arai Yasuhito, Saito Yuki, Shibata Tatsuhiro, Kataoka Keisuke

Abstract excerpt

We present our novel software, nanomonsv, for detecting somatic structural variations (SVs) using tumor and matched control long-read sequencing data with a single-base resolution. The current version of nanomonsv includes two detection modules, Canonical SV module, and Single breakend SV module. Using tumor/control paired long-read sequencing data from three cancer and their matched lymphoblastoid lines, we...

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PMID: 37336583
DOI: 10.1093/nar/gkad526
PMCID: PMC10415145

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