Article
A graph-based genome and pan-genome variation of the model plant Setaria.
Nature genetics - 1 Jul 2023
He Qiang, Tang Sha, Zhi Hui, Chen Jinfeng, Zhang Jun, Liang Hongkai, Alam Ornob, Li Hongbo, Zhang Hui, Xing Lihe, Li Xukai, Zhang Wei, Wang Hailong, Shi Junpeng, Du Huilong, Wu Hongpo, Wang Liwei, Yang Ping, Xing Lu, Yan Hongshan, Song Zhongqiang, Liu Jinrong, Wang Haigang, Tian Xiang, Qiao Zhijun, Feng Guojun, Guo Ruifeng, Zhu Wenjuan, Ren Yuemei, Hao Hongbo, Li Mingzhe, Zhang Aiying, Guo Erhu, Yan Feng, Li Qingquan, Liu Yanli, Tian Bohong, Zhao Xiaoqin, Jia Ruiling, Feng Baili, Zhang Jiewei, Wei Jianhua, Lai Jinsheng, Jia Guanqing, Purugganan Michael, Diao Xianmin
Abstract excerpt
Setaria italica (foxtail millet), a founder crop of East Asian agriculture, is a model plant for C4 photosynthesis and developing approaches to adaptive breeding across multiple climates. Here we established the Setaria pan-genome by assembling 110 representative genomes from a worldwide collection. The pan-genome is composed of 73,528 gene families, of which 23.8%, 42.9%, 29.4% and 3.9% are core, soft core,...
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