Article
Graph-based pan-genome reveals structural and sequence variations related to agronomic traits and domestication in cucumber.
Nature communications - 3 Feb 2022
Li Hongbo, Wang Shenhao, Chai Sen, Yang Zhiquan, Zhang Qiqi, Xin Hongjia, Xu Yuanchao, Lin Shengnan, Chen Xinxiu, Yao Zhiwang, Yang Qingyong, Fei Zhangjun, Huang Sanwen, Zhang Zhonghua
Abstract excerpt
Structural variants (SVs) represent a major source of genetic diversity and are related to numerous agronomic traits and evolutionary events; however, their comprehensive identification and characterization in cucumber (Cucumis sativus L.) have been hindered by the lack of a high-quality pan-genome. Here, we report a graph-based cucumber pan-genome by analyzing twelve chromosome-scale genome assemblies....
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