Detection of pathogens and antimicrobial resistance genes directly from urine samples in patients suspected of urinary tract infection by metagenomics nanopore sequencing: A large‐scale multi‐centre study

Abstract excerpt

Previous studies using metagenomics nanopore sequencing to detect pathogens and/or antimicrobial resistant (AMR) genes for urinary tract infection (UTI) had small sample sizes and only focused on UTI caused by bacteria.1, 2 Besides, the bioinformatics pipeline was not optimized. In this study, we optimized the metagenomics nanopore sequencing and bioinformatics pipeline suitable for detecting pathogens and AMR...

Topics

Share this publication in a Topic to start or enrich a Post.

• Share to Bacterial Identification and Susceptibility Testing
• Share to Gut microbiota and health