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Article

BGT: efficient and flexible genotype query across many samples.

Bioinformatics (Oxford, England) - 15 Feb 2016

Li Heng

Abstract excerpt

UNLABELLED: BGT is a compact format, a fast command line tool and a simple web application for efficient and convenient query of whole-genome genotypes and frequencies across tens to hundreds of thousands of samples. On real data, it encodes the haplotypes of 32 488 samples across 39.2 million SNPs into a 7.4 GB database and decodes up to 420 million genotypes per CPU second. The high performance enables...

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Identifiers

PMID: 26500154
DOI: 10.1093/bioinformatics/btv613
PMCID: PMC5963361

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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