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ShigaPass: an in silico tool predicting Shigella serotypes from whole-genome sequencing assemblies

23 Mar 2023

Abstract excerpt

Shigella is one of the commonest causes of diarrhoea worldwide and a major public health problem. Shigella serotyping is based on a standardized scheme that splits Shigella strains into four serogroups and 60 serotypes on the basis of biochemical tests and O-antigen structures. This conventional serotyping method is laborious, time-consuming, impossible to automate, and requires a high level of expertise....

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PMID: 36951906
DOI: 10.1099/mgen.0.000961

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