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Article

CDMAP/CDVIS: context-dependent mutation analysis package and visualization software.

G3 (Bethesda, Md.) - 11 Apr 2023

Patton David L, Cardenas Thomas, Mele Perrin, Navarro Jon, Sung Way

Abstract excerpt

The Context-dependent Mutation Analysis Package and Visualization Software (CDMAP/CDVIS) is an automated, modular toolkit used for the analysis and visualization of context-dependent mutation patterns (site-specific variation in mutation rate from neighboring-nucleotide effects). The CDMAP computes context-dependent mutation rates using a Variant Call File (VCF), Genbank file, and reference genome and can...

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PMID: 36917690
DOI: 10.1093/g3journal/jkac299
PMCID: PMC10085751

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