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Article

Extensive sequence duplication in Arabidopsis revealed by pseudo-heterozygosity.

Genome biology - 9 Mar 2023

Jaegle Benjamin, Pisupati Rahul, Soto-Jiménez Luz Mayela, Burns Robin, Rabanal Fernando A, Nordborg Magnus

Abstract excerpt

BACKGROUND: It is apparent that genomes harbor much structural variation that is largely undetected for technical reasons. Such variation can cause artifacts when short-read sequencing data are mapped to a reference genome. Spurious SNPs may result from mapping of reads to unrecognized duplicated regions. Calling SNP using the raw reads of the 1001 Arabidopsis Genomes Project we identified 3.3 million (44%)...

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PMID: 36895055
DOI: 10.1186/s13059-023-02875-3
PMCID: PMC9999624

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