Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome.

The Plant cell - 1 Jun 2020

Zmienko Agnieszka, Marszalek-Zenczak Malgorzata, Wojciechowski Pawel, Samelak-Czajka Anna, Luczak Magdalena, Kozlowski Piotr, Karlowski Wojciech M, Figlerowicz Marek

Abstract excerpt

Copy number variations (CNVs) greatly contribute to intraspecies genetic polymorphism and phenotypic diversity. Recent analyses of sequencing data for >1000 Arabidopsis (Arabidopsis thaliana) accessions focused on small variations and did not include CNVs. Here, we performed genome-wide analysis and identified large indels (50 to 499 bp) and CNVs (500 bp and larger) in these accessions. The CNVs fully overlap...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Arabidopsis
Share to DNA Copy Number Variations

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to DNA Transposable Elements

Share to Genome, Plant

Share to Genotype

Source

Open in PubMed Open full text

Identifiers

PMID: 32265262
DOI: 10.1105/tpc.19.00640
PMCID: PMC7268809

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 1 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome.PMID 32265262Read ↗

Copy number polymorphism in plant genomes.Semantic proximity Read ↗

Copy Number Variation: A Substrate for Plant Adaptation and Stress Response in ArabidopsisSemantic proximity Read ↗

Copy number variation shapes genome diversity in Arabidopsis over immediate family generational scales.Semantic proximity Read ↗

Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location.Semantic proximity Read ↗

Calling large indels in 1047 Arabidopsis with IndelEnsembler.Semantic proximity Read ↗

The impact and origin of copy number variations in the Oryza species.Semantic proximity Read ↗

Genome-Wide Analyses of Copy Number Variants in 751 Populus trichocarpa Individuals From Natural Populations.Semantic proximity Read ↗

A comprehensive analysis of copy number variations in diverse apple populations.Semantic proximity Read ↗

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.Semantic proximity Read ↗

Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana.Semantic proximity Read ↗

Cataloging Plant Genome Structural Variations.Semantic proximity Read ↗

Long-read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plantSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.