Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana.

Genome research - 1 Aug 2018

Press Maximilian O, McCoy Rajiv C, Hall Ashley N, Akey Joshua M, Queitsch Christine

Abstract excerpt

Short tandem repeat (STR) mutations may comprise more than half of the mutations in eukaryotic coding DNA, yet STR variation is rarely examined as a contributor to complex traits. We assessed this contribution across a collection of 96 strains of Arabidopsis thaliana, genotyping 2046 STR loci each, using highly parallel STR sequencing with molecular inversion probes. We found that 95% of examined STRs are...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Alleles
Share to Arabidopsis
Share to DNA Copy Number Variations

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Genotype

Share to Microsatellite Repeats

Share to Mutation

Share to Polymorphism, Single Nucleotide

Source

Open in PubMed Open full text

Identifiers

PMID: 29970452
DOI: 10.1101/gr.231753.117
PMCID: PMC6071631

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 5 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana.PMID 29970452Read ↗

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.Semantic proximity Read ↗

Whole-genome sequencing of multiple Arabidopsis thaliana populations.Semantic proximity Read ↗

MIPSTR: a method for multiplex genotyping of germ-line and somatic STR variation across many individualsSemantic proximity Read ↗

Genomic variation in Arabidopsis: tools and insights from next-generation sequencing.Semantic proximity Read ↗

The pattern of polymorphism in Arabidopsis thaliana.Semantic proximity Read ↗

Inferring short tandem repeat variation from paired-end short reads.Semantic proximity Read ↗

Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species.Semantic proximity Read ↗

1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana.Semantic proximity Read ↗

Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits.Semantic proximity Read ↗

Length variation in short tandem repeats affects gene expression in natural populations of Arabidopsis thaliana.Semantic proximity Read ↗

A genetic defect caused by a triplet repeat expansion in Arabidopsis thaliana.Semantic proximity Read ↗

The conserved PFT1 tandem repeat is crucial for proper flowering in Arabidopsis thaliana.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.