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Article

NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.

Bioinformatics (Oxford, England) - 1 Jan 2023

Huang Neng, Xu Minghua, Nie Fan, Ni Peng, Xiao Chuan-Le, Luo Feng, Wang Jianxin

Abstract excerpt

MOTIVATION: Oxford Nanopore sequencing has great potential and advantages in population-scale studies. Due to the cost of sequencing, the depth of whole-genome sequencing for per individual sample must be small. However, the existing single nucleotide polymorphism (SNP) callers are aimed at high-coverage Nanopore sequencing reads. Detecting the SNP variants on low-coverage Nanopore sequencing data is still a...

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PMID: 36548365
DOI: 10.1093/bioinformatics/btac824
PMCID: PMC9822538

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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