Article
Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches.
Viruses - 29 Jul 2022
Mugnier Nathalie, Griffon Aurélien, Simon Bruno, Rambaud Maxence, Regue Hadrien, Bal Antonin, Destras Gregory, Tournoud Maud, Jaillard Magali, Betraoui Abel, Santiago Emmanuelle, Cheynet Valérie, Vignola Alexandre, Ligeon Véronique, Josset Laurence, Brengel-Pesce Karen
Abstract excerpt
Whole-genome sequencing has become an essential tool for real-time genomic surveillance of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide. The handling of raw next-generation sequencing (NGS) data is a major challenge for sequencing laboratories. We developed an easy-to-use web-based application (EPISEQ SARS-CoV-2) to analyse SARS-CoV-2 NGS data generated on common sequencing platforms...
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