Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

24 Mar 2022

Abstract excerpt

SUMMARY: Genomics has become an essential technology for surveilling emerging infectious disease outbreaks. A range of technologies and strategies for pathogen genome enrichment and sequencing are being used by laboratories worldwide, together with different and sometimes ad hoc, analytical procedures for generating genome sequences. A fully integrated analytical process for raw sequence to consensus genome...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Genomics and Phylogenetic Studies
Share to SARS-CoV-2 and COVID-19 Research
Share to vaccines and immunoinformatics approaches

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Source

Identifiers

PMID: 35561186
DOI: 10.1093/bioinformatics/btac176

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing effortsPMID 35561186Read ↗

Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillanceSemantic proximity Read ↗

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic WorkflowsSemantic proximity Read ↗

Evaluation of EPISEQ SARS-CoV-2 and a Fully Integrated Application to Identify SARS-CoV-2 Variants from Several Next-Generation Sequencing Approaches.Semantic proximity Read ↗

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunitiesSemantic proximity Read ↗

INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillanceSemantic proximity Read ↗

INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillanceSemantic proximity Read ↗

A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samplesSemantic proximity Read ↗

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore SequencingSemantic proximity Read ↗

High-precision and cost-efficient sequencing for real-time COVID-19 surveillance.Semantic proximity Read ↗

Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisationSemantic proximity Read ↗

ViralFlow: A Versatile Automated Workflow for SARS-CoV-2 Genome Assembly, Lineage Assignment, Mutations and Intrahost Variant Detection.Semantic proximity Read ↗

ViralFlow: an automated workflow for SARS-CoV-2 genome assembly, lineage assignment, mutations and intrahost variants detectionSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.