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Article

Assessment of linkage disequilibrium patterns between structural variants and single nucleotide polymorphisms in three commercial chicken populations.

BMC genomics - 9 Mar 2022

Geibel Johannes, Praefke Nora Paulina, Weigend Steffen, Simianer Henner, Reimer Christian

Abstract excerpt

BACKGROUND: Structural variants (SV) are causative for some prominent phenotypic traits of livestock as different comb types in chickens or color patterns in pigs. Their effects on production traits are also increasingly studied. Nevertheless, accurately calling SV remains challenging. It is therefore of interest, whether close-by single nucleotide polymorphisms (SNPs) are in strong linkage disequilibrium (LD)...

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PMID: 35264116
DOI: 10.1186/s12864-022-08418-7
PMCID: PMC8908679

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