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Estimation of linkage disequilibrium levels and allele frequency distribution in crossbred Vrindavani cattle using 50K SNP data.

PloS one - 1 Jan 2021

Singh Akansha, Kumar Amit, Mehrotra Arnav, A Karthikeyan, Pandey Ashwni Kumar, Mishra B P, Dutt Triveni

Abstract excerpt

The objective of this study was to calculate the extent and decay of linkage disequilibrium (LD) in 96 crossbred Vrindavani cattle genotyped with Bovine SNP50K Bead Chip. After filtering, 43,821 SNPs were retained for final analysis, across 2500.3 Mb of autosome. A significant percentage of SNPs was having minor allele frequency of less than 0.20. The extent of LD between autosomal SNPs up to 10 Mb apart across...

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Identifiers

PMID: 34762692
DOI: 10.1371/journal.pone.0259572
PMCID: PMC8584695

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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