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ddRAD sequencing based genotyping of six indigenous dairy cattle breeds of India to infer existing genetic diversity and population structure.

Scientific reports - 9 Jun 2023

Masharing Nampher, Sodhi Monika, Chanda Divya, Singh Inderpal, Vivek Prince, Tiwari Manish, Kumari Parvesh, Mukesh Manishi

Abstract excerpt

The present investigation aimed to identify genome wide SNPs and to carry out diversity and population structure study using ddRAD-seq based genotyping of 58 individuals of six indigenous milch cattle breeds (Bos indicus) such as Sahiwal, Gir, Rathi, Tharparkar, Red Sindhi and Kankrej of India. A high percentage of reads (94.53%) were mapped to the Bos taurus (ARS-UCD1.2) reference genome assembly. Following...

Topics

Cattle
Animals
Genotype
Phylogeny
Genome
Polymorphism, Single Nucleotide
Inbreeding
India

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Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Identifiers

PMID: 37296129
DOI: 10.1038/s41598-023-32418-6
PMCID: PMC10256769

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 31 Aug 2026.

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