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Article

Whole-genome sequencing and ad hoc shared genome analysis of Staphylococcus aureus isolates from a New Zealand primary school.

Scientific reports - 13 Oct 2021

Scott Pippa, Zhang Ji, Anderson Trevor, Priest Patricia C, Chambers Stephen, Smith Helen, Murdoch David R, French Nigel, Biggs Patrick J

Abstract excerpt

Epidemiological studies of communicable diseases increasingly use large whole-genome sequencing (WGS) datasets to explore the transmission of pathogens. It is important to obtain an initial overview of datasets and identify closely related isolates, but this can be challenging with large numbers of isolates and imperfect sequencing. We used an ad hoc whole-genome multi locus sequence typing method to summarise...

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Identifiers

PMID: 34645857
DOI: 10.1038/s41598-021-99080-8
PMCID: PMC8514452

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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