Discover Community Create You

Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Performance of methods to detect genetic variants from bisulphite sequencing data in a non-model species.

Molecular ecology resources - 1 Feb 2022

Lindner Melanie, Gawehns Fleur, Te Molder Sebastiaan, Visser Marcel E, van Oers Kees, Laine Veronika N

Abstract excerpt

The profiling of epigenetic marks like DNA methylation has become a central aspect of studies in evolution and ecology. Bisulphite sequencing is commonly used for assessing genome-wide DNA methylation at single nucleotide resolution but these data can also provide information on genetic variants like single nucleotide polymorphisms (SNPs). However, bisulphite conversion causes unmethylated cytosines to appear as...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to High-Throughput Nucleotide Sequencing
Share to Polymorphism, Single Nucleotide

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Sequence Analysis, DNA

Share to Songbirds

Share to Sulfites

Share to Whole Genome Sequencing

Source

Open in PubMed Open full text

Identifiers

PMID: 34435438
DOI: 10.1111/1755-0998.13493
PMCID: PMC9290141

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Performance of methods to detect genetic variants from bisulphite sequencing data in a non-model species.PMID 34435438Read ↗

Calling SNPs without a reference sequence.Semantic proximity Read ↗

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional Bayesian approachesSemantic proximity Read ↗

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data.Semantic proximity Read ↗

BsRADseq: screening DNA methylation in natural populations of non-model species.Semantic proximity Read ↗

Evaluating the accuracy of variant calling methods using the frequency of parent-offspring genotype mismatch.Semantic proximity Read ↗

Target-enriched enzymatic methyl sequencing: flexible, scalable and inexpensive hybridization capture for quantifying DNA methylationSemantic proximity Read ↗

Recommendations for Population and Individual Diagnostic SNP Selection in Non-Model SpeciesSemantic proximity Read ↗

BS-SNPer: SNP calling in bisulfite-seq data.Semantic proximity Read ↗

Chromosome-level reference genome for North American bison (Bison bison) and variant database aids in identifying albino mutation.Semantic proximity Read ↗

A strategy for studying epigenetic diversity in natural populations: proof of concept in poplar and oak.Semantic proximity Read ↗

Exploring the unmapped DNA and RNA reads in a songbird genomeSemantic proximity Read ↗

Genotyping-in-thousands by sequencing (GT-seq) of noninvasive faecal and degraded samples: A new panel to enable ongoing monitoring of Canadian polar bear populations.Semantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.