Article
High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data.
Briefings in bioinformatics - 5 Nov 2021
Phan Nam Nhut, Chattopadhyay Amrita, Lee Tsui-Ting, Yin Hsiang-I, Lu Tzu-Pin, Lai Liang-Chuan, Hwa Hsiao-Lin, Tsai Mong-Hsun, Chuang Eric Y
Abstract excerpt
In this study, we proposed a deep learning (DL) model for classifying individuals from mixtures of DNA samples using 27 short tandem repeats and 94 single nucleotide polymorphisms obtained through massively parallel sequencing protocol. The model was trained/tested/validated with sequenced data from 6 individuals and then evaluated using mixtures from forensic DNA samples. The model successfully identified both...
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