Article
Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle).
PloS one - 1 Jan 2020
Lee Hyo Jun, Chung Yoon Ji, Jang Sungbong, Seo Dong Won, Lee Hak Kyo, Yoon Duhak, Lim Dajeong, Lee Seung Hwan
Abstract excerpt
It was hypothesized that single-nucleotide polymorphisms (SNPs) extracted from text-mined genes could be more tightly related to causal variant for each trait and that differentially weighting of this SNP panel in the GBLUP model could improve the performance of genomic prediction in cattle. Fitting two GRMs constructed by text-mined SNPs and SNPs except text-mined SNPs from 777k SNPs set (exp_777K) as different...
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