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Article

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files.

Briefings in bioinformatics - 20 Jul 2021

Dong Shan-Shan, He Wei-Ming, Ji Jing-Jing, Zhang Chi, Guo Yan, Yang Tie-Lin

Abstract excerpt

The triangular correlation heatmap aiming to visualize the linkage disequilibrium (LD) pattern and haplotype block structure of SNPs is ubiquitous component of population-based genetic studies. However, current tools suffered from the problem of time and memory consuming. Here, we developed LDBlockShow, an open source software, for visualizing LD and haplotype blocks from variant call format files. It is time and...

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PMID: 33126247
DOI: 10.1093/bib/bbaa227

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