snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package.

Abstract excerpt

UNLABELLED: snp.plotter is a newly developed R package which produces high-quality plots of results from genetic association studies. The main features of the package include options to display a linkage disequilibrium (LD) plot below the P-value plot using either the r2 or D' LD metric, to set the X-axis to equal spacing or to use the physical map of markers, and to specify plot labels, colors, symbols and LD...

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