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Article

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis.

PLoS neglected tropical diseases - 1 Sept 2020

Busch Anne, Homeier-Bachmann Timo, Abdel-Glil Mostafa Y, Hackbart Anja, Hotzel Helmut, Tomaso Herbert

Abstract excerpt

By combining a reference-independent SNP analysis and average nucleotide identity (ANI) with affinity propagation clustering (APC), we developed a significantly improved methodology allowing resolving phylogenetic relationships, based on objective criteria. These bioinformatics tools can be used as a general ruler to determine phylogenetic relationships and clustering of bacteria, exemplary done with Francisella...

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Identifiers

PMID: 32991594
DOI: 10.1371/journal.pntd.0008018
PMCID: PMC7523947

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PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 7 Sept 2026. Manifest publication-graph-cohort-2026-09-07.1.

Source receipt: pubmed, retrieved 7 Sept 2026.

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