Loading publication...

Noodle always counts identifier-free feature events for service operation. With your permission, Google Analytics can also estimate audience and engagement. Search text, publication identifiers, cookies, IP addresses and browser fingerprints are never included in Noodle's first-party event counters.

Privacy details

Article

Core genome MLST and resistome analysis of Klebsiella pneumoniae using a clinically amenable workflow.

Diagnostic microbiology and infectious disease - 1 May 2020

Fida Madiha, Cunningham Scott A, Murphy Matthew P, Bonomo Robert A, Hujer Kristine M, Hujer Andrea M, Kreiswirth Barry N, Chia Nicholas, Jeraldo Patricio R, Nelson Heidi, Zinsmaster Nicole M, Toraskar Nikhil, Chang Weizhong, Patel Robin

Abstract excerpt

Whole genome sequencing (WGS) is replacing traditional microbiological typing methods for investigation of outbreaks in clinical settings. Here, we used a clinical microbiology laboratory core genome multilocus sequence typing (cgMLST) workflow to analyze 40 isolates of K. pneumoniae which are part of the Antimicrobial Resistance Leadership Group (ARLG) isolate collection, alongside 10 Mayo Clinic K. pneumoniae...

Read the complete abstract on PubMed

Topics

Share this publication in a Topic to start or enrich a Post.

Share to Bacterial Typing Techniques
Share to beta-Lactamases

Methodology Data sources Editorial policy Privacy About Contact Helena Bioinformatics

Share to Electrophoresis, Gel, Pulsed-Field

Share to Klebsiella Infections

Share to Klebsiella pneumoniae

Share to Multilocus Sequence Typing

Share to Whole Genome Sequencing

Share to Workflow

Source

Open in PubMed Open full text

Identifiers

PMID: 32098688
DOI: 10.1016/j.diagmicrobio.2020.114996
PMCID: PMC7422488

Provenance

PubMed metadata and Literature Corpus relationships. Corpus snapshot updated 2 Sept 2026.

Related research

Semantic proximity does not establish scientific evidence.

Research trail→

Click a neighbor to travelStep 1 · 12 closest

Core genome MLST and resistome analysis of Klebsiella pneumoniae using a clinically amenable workflow.PMID 32098688Read ↗

Next-Generation Sequencing of Klebsiella Pneumoniae Isolated from Exudates: A Comprehensive Analysis of Antimicrobial and Virulence Genes, Serotypes, and Sequence TypesSemantic proximity Read ↗

Bacterial genome sequencing in clinical microbiology: a pathogen-oriented reviewSemantic proximity Read ↗

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex.Semantic proximity Read ↗

Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdbSemantic proximity Read ↗

Integrated genomic and phenotypic profiling of clinical Klebsiella pneumoniae reveals an ESBL-dominated, lineage-diverse hospital population.Semantic proximity Read ↗

Genomic surveillance framework and global population structure for <i>Klebsiella pneumoniae</i>Semantic proximity Read ↗

A metatranscriptome based approach to predict multidrug resistance phenotypes in Klebsiella pneumoniae without culturing.Semantic proximity Read ↗

Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing.Semantic proximity Read ↗

Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospitalSemantic proximity Read ↗

Whole-genome typing and characterization of blaVIM19-harbouring ST383 Klebsiella pneumoniae by PFGE, whole-genome mapping and WGS.Semantic proximity Read ↗

Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health MicrobiologySemantic proximity Read ↗

Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complexSemantic proximity Read ↗

⌁Select a neighboring publication to make it the new centre.