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Estimating Epidemic Incidence and Prevalence from Genomic Data

24 Apr 2019

Abstract excerpt

Modern phylodynamic methods interpret an inferred phylogenetic tree as a partial transmission chain providing information about the dynamic process of transmission and removal (where removal may be due to recovery, death, or behavior change). Birth-death and coalescent processes have been introduced to model the stochastic dynamics of epidemic spread under common epidemiological models such as the SIS and SIR...

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PMID: 31058982
DOI: 10.1093/molbev/msz106

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