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Split-Read Indel and Structural Variant Calling Using PINDEL.

Methods in molecular biology (Clifton, N.J.) - 1 Jan 2018

Ye Kai, Guo Li, Yang Xiaofei, Lamijer Eric-Wubbo, Raine Keiran, Ning Zemin

Abstract excerpt

Genetic variations are important evolutionary forces in all forms of life in nature. Accurate and efficient detection of various forms of genetic variants is crucial for understanding cell function, evolution and diseases in living organisms. In this chapter, we describe a detailed protocol that uses Pindel, a split-read algorithm, to discover indels and structural variants in a given genome, from Illumina...

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PMID: 30039366
DOI: 10.1007/978-1-4939-8666-8_7

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